PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0126200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 394aa    MW: 42164.6 Da    PI: 4.9052
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0126200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-11221264654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Spipo2G0126200 221 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 264
                     589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.453215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-15218277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-12221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.32E-5222269No hitNo description
PfamPF000104.9E-9222264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-14222276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MELDDHAFLN ELLAMRKEPW DVSFPTALGD LFSAEGGGSF DCCFDEPGPI CGAAGGVFAP  60
LPNATTATYG DVGETSGLTF GCYNPAVICP TPPISFGGRF LPAVPPDIQS SCSTSTTSNQ  120
GAAIYALTSS SKEDCRADLE AEELGLVHGV HSHGPGGSGH VVCKVEELNQ LSSLEGRGTI  180
NSNAAMAFPL APFDGGSSSS SGPPEGKGRA KKLDGQPSKN LMAERRRRKR LNDRLSMLRS  240
VVPKISKMDR TSILGDTIDY MKELLDRIQI LREEMGEQGD GSYPSSEGLL RLLKNRLSHD  300
EVLIRNAPKF DVERRETDTR VEMCCAARAG LLLSTVNSLE ALGLEIEQCV VSCFNDFGMH  360
ASCSEDAKQR ALISTEEIKQ TLFRNAGYGG RCV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223230ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3563492e-41AK356349.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1033I10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935191.11e-101PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL19e-80BH093_ARATH; Transcription factor bHLH93
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-79beta HLH protein 93